3e + 04 A549 cells were seeded into the wells of a 96-well plate

3e + 04 A549 cells were seeded into the wells of a 96-well plate and transduced with the recombinant adenoviruses at an MOI of 100 TCID50/cell. Twenty-four hours later, cells were infected with wt Ad5 at an MOI of 0.01. If required, CDV was added to each well in concentrations ranging from 0 to 30 μM. The plates were incubated for 0, 2, 4, or 6 days without change of medium before freezing at −80 °C. Crude virus suspensions were obtained by freeze-thawing the plates thrice and removal of cell debris by centrifugation for 15 min at 2800 rpm. The replication rate of recombinant adenoviruses carrying different numbers of amiRNA-encoding sequences

was assessed by infecting 1e + 05 T-REx-293 cells with the vectors at an MOI of 0.1 TCID50/cell. AmiRNA expression was induced Decitabine by addition of 1 μg/ml doxycycline to the medium and cells were allowed to grow for an additional

48 h. Crude lysates PD-L1 mutation were prepared as described above. Wt Ad5 DNA levels were determined by qPCR using the following TaqMan primer/probe set directed against the viral E1A gene (E1A-fwd 5′-GACGGCCCCCGAAGATC-3′, E1A-rev 5′-TCCTGCACCGCCAACATT-3′, and E1A-p 5′-CGAGGAGGCGGTTTCGCAGA-3′). Adenovirus genome copy numbers were calculated by using serial dilutions of an adenoviral reference DNA as a standard. DNA levels of amiRNA-expressing recombinant viruses were determined using a TaqMan primer/probe set specific for the adenoviral hexon gene (hexon-fwd 5′- CACTCATATTTCTTACATGCCCACTATT-3′, hexon-rev 5′- GGCCTGTTGGGCATAGATTG-3′, hexon-probe 5′- AGGAAGGTAACTCACGAGAACTAATGGGCCA -3′). Otherwise, qPCR conditions were as described above. EGFP expression rates were determined by FACS analysis. Cells transduced with EGFP-expressing adenoviruses were harvested by trypsinization, resuspended in normal cell culture medium, and pelleted by centrifugation at 1200 rpm for 5 min. Cepharanthine Thereafter, cells were washed once with phosphate buffered saline (PBS) and fixed with 1% formaldehyde in PBS. Samples were analyzed with a FACS Calibur analyzer (Becton Dickinson, Heidelberg, Germany)

and percentages of fluorescent cells and mean fluorescence intensities (MFIs) were calculated. All the data are expressed as mean ± standard deviation (SD). To test for statistical significance, one-way ANOVA corrected with Bonferroni’s post hoc test was applied. A p value of <0.05 was considered statistically significant. At late stages of infection, adenoviruses produce high amounts of the noncoding virus-associated RNAs (VA RNAs). These RNAs are at least partially processed into functional miRNAs (mivaRNAs), and their production has been reported to inhibit cellular RNAi (Andersson et al., 2005 and Lu and Cullen, 2004). This inhibition is thought to be mediated by the saturation of the cellular RNAi machinery at different levels (i.e., cleavage of pri-miRNAs by Drosha, export of pre-miRNAs by Exportin-5, processing by Dicer, and loading into RISC).

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